Comparisons / Entra ID Application Proxy vs Pomerium

Entra ID Application Proxy vs Pomerium

Microsoft Entra ID Application Proxy is a cloud-based reverse-proxy service that publishes on-premises web applications for secure remote access without a traditional VPN. The platform pairs a Microsoft-hosted proxy service with a lightweight on-prem connector that uses outbound-only connections, so no inbound firewall ports need to be opened. By gating every session behind Entra ID authentication and Conditional Access policies, Application Proxy extends single sign-on and identity-based controls to legacy internal apps.

It's main features include:

  • Publishing on-premises web applications to remote users without deploying a VPN client.

  • Outbound-only connector agents that avoid opening inbound firewall ports, with connector groups for high availability and load balancing.

  • Native single sign-on and Conditional Access enforcement through Entra ID, included with P1 and P2 licenses.

Entra ID Application Proxy
Pomerium logo
What is it?
Cloud-based Reverse Proxy
Self-hosted Reverse Proxy
Zero Trust
No
Yes
Continuous Verification
No
Yes, every request is validated
Device authentication
via Conditional Access / Intune
Yes
Open Source
Client-based
No client for web apps; on-prem connector agent required
No
Fills the VPN gap
Publishes on-prem web apps without a VPN
Yes
Integrates with Multiple Identity Providers
Entra ID only
Protocols Supported
HTTP/HTTPS and RDP
HTTP/HTTPS, SSH, MCP, RDP, TCP, UDP, gRPC, databases
Latency
Traffic routed through Microsoft's cloud service
Best. Deployed at edge, no latency or bandwidth costs.
Layer
7 (HTTP/HTTPS Only)
7
Entra ID Application Proxy
Pomerium logo
What is it?
Cloud-based Reverse Proxy
Self-hosted Reverse Proxy
Zero Trust
No
Yes
Continuous Verification
No
Yes, every request is validated
Device authentication
via Conditional Access / Intune
Yes
Open Source
Client-based
No client for web apps; on-prem connector agent required
No
Fills the VPN gap
Publishes on-prem web apps without a VPN
Yes
Integrates with Multiple Identity Providers
Entra ID only
Protocols Supported
HTTP/HTTPS and RDP
HTTP/HTTPS, SSH, MCP, RDP, TCP, UDP, gRPC, databases
Latency
Traffic routed through Microsoft's cloud service
Best. Deployed at edge, no latency or bandwidth costs.
Layer
7 (HTTP/HTTPS Only)
7

Our Recommendation

If an organization is fully committed to Microsoft and mainly needs to publish on-prem Windows web apps to authenticated remote users, Entra ID Application Proxy is the path of least resistance — it's bundled with Entra ID P1/P2 and requires almost no new infrastructure.

Lead with Pomerium when the requirement is true zero-trust enforcement: continuous per-request authorization, fine-grained context-aware policy, multi-IdP and multi-cloud reach, and broader protocol support — without welding access control to a single identity vendor. Critically, this isn't either/or: Pomerium can use Entra ID as its identity provider, so it layers on top of an existing Microsoft investment rather than replacing it.

Use Cases

Best fit for Pomerium

  • One consistent access policy across multiple clouds and on-prem

  • Heterogeneous or multi-IdP environments

  • True zero-trust: continuous, per-request authorization

  • Protecting non-HTTP / TCP services alongside web apps

  • Self-hosted, air-gapped, or vendor-neutral requirements

Best fit for Entra App Proxy

  • Organizations already standardized on Entra ID P1/P2

  • Publishing legacy on-prem Windows web apps to remote users

  • Minimal new infrastructure; Microsoft-managed plumbing

  • Teams that want SSO + Conditional Access at the login boundary

  • No appetite to operate their own proxy layer

Strengths

Pomerium

  • Per-request authorization, not just authenticate-and-hand-off

  • IdP-agnostic — works with any OIDC/SAML provider

  • Context-aware policy down to route and method

  • Broad protocol and environment coverage

  • Self-hostable; no dependency on one vendor's cloud

  • Reviewers rate it easier to set up and administer

Entra ID App Proxy

  • Near-zero infrastructure — Microsoft runs the service

  • Outbound-only connector; no inbound firewall ports

  • Bundled with existing Entra ID P1/P2 licensing

  • Tight, native integration with the Microsoft stack

  • Built-in HA and load balancing via connector groups

Weaknesses

Pomerium

  • You operate it — more control means more responsibility

  • Not bundled into an existing Microsoft license

  • Requires deliberate deployment/topology decisions

Entra ID App Proxy

  • Authorization is coarse — login-time, not per request

  • Locked to Entra ID; no multi-IdP support

  • Primarily HTTP/HTTPS web apps

  • Deep coupling to the Microsoft ecosystem and licensing

  • Limited reach across non-Microsoft clouds

Evaluators Should Know

  • They aren't mutually exclusive. Pomerium can use Entra ID as its identity provider, so it complements an existing Microsoft investment rather than ripping it out.

  • "VPN-less access" means different things here. App Proxy gets the right authenticated user to a published web app; Pomerium continuously authorizes every request against contextual policy.

  • Licensing shapes the decision. App Proxy rides along with Entra ID P1/P2, which can make it look "free" — but that value is tied to staying in the Microsoft ecosystem.

  • Scope of protection differs. If the estate includes non-HTTP services, multiple clouds, or multiple identity providers, App Proxy's boundaries show quickly.

  • Operational model is a real trade-off. Microsoft-managed simplicity vs. self-hosted control is the central tension — weigh it against the org's security posture and compliance needs.

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